DNA Binding Site
| Accessions: | AAAAAAAA (UniPROBE 20160601), MA0476.2.3 (JASPAR 2024), MA1125.2.1 (JASPAR 2024), MA1125.2.10 (JASPAR 2024), MA1125.2.11 (JASPAR 2024), MA1125.2.12 (JASPAR 2024), MA1125.2.14 (JASPAR 2024), MA1125.2.16 (JASPAR 2024), MA1125.2.19 (JASPAR 2024), MA1125.2.2 (JASPAR 2024), MA1125.2.3 (JASPAR 2024), MA1125.2.4 (JASPAR 2024), MA1823.2.12 (JASPAR 2024) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Homo sapiens, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AAAAAAAA |
| Type: | Heterodimer |
| Binding TFs: | P01100 (bZIP transcription factor, Basic region leucine zipper) UP00037A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00044A (bZIP Maf transcription factor) UP00077A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00370A (Helix-loop-helix DNA-binding domain) Q8TF68 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00629B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) B4FDH4 (Dof domain, zinc finger) B4FDH4 P01100 Q8TF68 |
| Binding Motifs: | UP00037A_1 wayAAwhAAmAAkar UP00044A_1 wwAAwwTGCTGACtt UP00077A_1 wwCCwwATwwGGwa UP00370A_1 tawgrCACGTGTchwaw UP00037A_2 dyggkTCAATAAytykr UP00044A_2 raaAAAAkTGCAmsr UP00077A_2 stwwaaAaAAAammtwh UP00629B_1 dttdryggGGtGgGwawakamck MA0476.2 TGAsTCAT MA1125.2 AAAAAAaa MA1823.2 AAAGAAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed] Thunyakitpisal P., Alvarez M., Tokunaga K., Onyia J. E., Hock J., Ohashi N., Feister H., Rhodes S. J., Bidwell J. P. Cloning and functional analysis of a family of nuclear matrix transcription factors (NP/NMP4) that regulate type I collagen expression in osteoblasts.. J. Bone Miner. Res. 16:10-23 (2001). [Pubmed] Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). [Pubmed] |
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