footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	GTTAGTTA (AthaMYB 1.0), GTTAGTTA (UniPROBE 20160601)
Organisms:	Arabidopsis thaliana, Mus musculus
Libraries:	AthaMYB 1.0 ¹, UniPROBE 20160601 ² ¹ Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] ² Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	GTTAGTTA
Type:	Heterodimer
Binding TFs:	UP00222A (Homeobox domain) AtMYB0 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB100 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB101 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB103 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB105 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB107 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB109 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB110 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB111 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB113 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB115 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB118 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB121 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB124 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB14 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB19 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB22 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB23 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB26 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB27 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB30 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB36 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB41 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB44 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB45 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB46 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB48 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB49 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB5 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB50 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB53 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB55 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB56 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB60 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB61 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB63 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB65 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB66 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB67 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB69 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB70 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB71 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB73 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB77 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB80 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB82 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB86 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB87 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB94 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB95 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB96 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) AtMYB97 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Binding Motifs:	UP00222A_1 dkykGTTAACTAryybt AtMYB0_II rkTAGTTr AtMYB100_II / AtMYB105_II / AtMYB109_II / AtMYB115_II GTTAGTTA AtMYB101_II / AtMYB65_II / AtMYB97_II GTTAGTTr AtMYB103_II RkTwGKTr AtMYB107_II rbTdGTTr AtMYB110_II rkTrGTTA AtMYB111_II GkTwGkTr AtMYB113_II RbTdGTTR AtMYB118_II GTwrGTTA AtMYB121_II RkTwGKTr AtMYB124_II / AtMYB56_II RbTWGTTr AtMYB14_II / AtMYB71_II rkTaGTTr AtMYB19_II GkTaGkTr AtMYB22_II GyTwGTTr AtMYB23_II GYWdGTTr AtMYB26_II GyTwGTTr AtMYB27_II / AtMYB48_II rkTrGTTr AtMYB30_II / AtMYB60_II GdYAGKTR AtMYB36_II / AtMYB55_II / AtMYB69_II GywdGTTr AtMYB41_II rbTrGTTA AtMYB44_II GdtAGTTr AtMYB45_II GkTAGTTr AtMYB46_II RKTWGkTr AtMYB49_II RkTrGTTr AtMYB50_II / AtMYB86_II GkTwGkTr AtMYB53_II / AtMYB61_II GkTWGkTR AtMYB5_II RbWdGTTR AtMYB63_II GbTwGkTR AtMYB66_II rkTrGTTA AtMYB67_II / AtMYB82_II rkTrGTTR AtMYB70_II GwhrGTTr AtMYB73_II RdYAGTTr AtMYB77_II rdtAGTTA AtMYB80_II GkTwGkTr AtMYB87_II rkTAGTTA AtMYB94_II / AtMYB96_II GtTAGTTG AtMYB95_II RkTdGTTr
Publications:	Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, PeÃ±a-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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