DNA Binding Site
| Accessions: | ATCGATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATCGATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00138A (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00624B (Homeobox domain) |
| Binding Motifs: | UP00138A_1 vmrgyAATTrsytsAd UP00609A_1 ctmwrkTAATCGATTAdckwtc UP00609B_1 kawmktTAATCGATTAmyrrad UP00609C_1 krwmktTAATCGATTActrgmd UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad UP00624B_1 trvgwbgsTaATtAgcmwawwmw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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