DNA Binding Site
| Accessions: | AAGATTCG (UniPROBE 20160601), MA1386.3.12 (JASPAR 2024), MA1390.3.15 (JASPAR 2024), MA1390.3.20 (JASPAR 2024) |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AAGATTCG |
| Type: | Heterodimer |
| Binding TFs: | Q9FPE8 (Myb-like DNA-binding domain) Q8VZS3 (Myb-like DNA-binding domain) UP00552A (Myb-like DNA-binding domain) Q8VZS3 Q9FPE8 |
| Binding Motifs: | UP00552A_1 kawAGATwCGstkw UP00552A_2 kwwAGATwCGstww UP00552A_3 kmwAGATwCGswtw UP00552A_4 tbywAGATwYksyk UP00552A_5 khaAGATwYgstka UP00552A_6 kwaAGATwygstka MA1386.3 aAGATTCt MA1390.3 AAGATTCc |
| Publications: | Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.