DNA Binding Site
| Accessions: | ATTTATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTTATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00133A (Homeobox domain) UP00135A (Homeobox domain) UP00177A (Homeobox domain) UP00595B (Homeobox domain) UP00597A (Homeobox domain) UP00597B (Homeobox domain) UP00597D (Homeobox domain) UP00597F (Homeobox domain) UP00597G (Homeobox domain) UP00597H (Homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00133A_1 drvgGymATAAAayky UP00135A_1 ywrgGTCGTAAAwwywc UP00177A_1 ywavGTCGTAAAatywt UP00595B_1 wamktwTAATywATTAtartttt UP00597A_1 ykrsmthymATWAAawvcmgth UP00597A_2 ckyaawkCTCrTAAAawyrdmw UP00597B_1 tksmrytyaATAAAAwwcdmtt UP00597D_1 tkswwyyyaATAAAAwwcmmtt UP00597F_1 tdccakmGTAyAAAAkwhawwr UP00597F_2 yksaakmGTAYAAAAtwmawwv UP00597G_1 wwtaaryYAATAAAAwtcwmww UP00597G_2 wrkmrayYAATAAAAwwcwmtt UP00597H_1 kksmrcyyAATAAAAwwmavtt UP00617B_1 twrmrtwTATTAATAwwbwtay |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.