DNA Binding Site
| Accessions: | CCCAATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CCCAATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00120A (Homeobox domain) UP00156A (Homeobox domain) UP00243A (Homeobox domain) UP00506A (Homeobox domain) UP00584A (Homeobox domain) UP00584C (Homeobox domain) UP00584F (Homeobox domain) UP00594A (Homeobox domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00614E (Homeobox domain) |
| Binding Motifs: | UP00120A_1 tgmayYAATTRryksrr UP00156A_1 vmagACyAATTAgykht UP00243A_1 hmyvCyAATTrGkbgw UP00506A_1 amkwgvryyAATTrrcksacyw UP00584A_2 aAgdwcgCyAATTrGckmbtgm UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00594A_2 ryrtkwrCyAATTrGtbgwmgw UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00609A_1 ctmwrkTAATCGATTAdckwtc UP00609B_1 kawmktTAATCGATTAmyrrad UP00609C_1 krwmktTAATCGATTActrgmd UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00614E_1 wbmrwkgvtrATyakcmwwwwmw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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