DNA Binding Site
| Accessions: | ATAATGAG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAATGAG |
| Type: | Heterodimer |
| Binding TFs: | UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00618C (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00105A_1 rmttAATTAATTAadtc UP00128A_1 swtAaTTAATTArkkyr UP00129A_1 rmyTAATTAATTAaktm UP00158A_1 rrwtAATTAATTAwgtc UP00179A_1 ttkTATGCWAATkara UP00191A_1 ywkTATGCWAATkara UP00254A_1 dtdwrwTAATTArktw UP00616B_1 hkwrythATTATGCRgayakhm UP00618A_1 wwvrybagcTAATTArkgywmt UP00618B_1 wyhcgrgcTAATTAkcycarwaw UP00618C_1 twwmrybagcTAATTArbrywmt |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.