DNA Binding Site
| Accessions: | ACATGTAC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ACATGTAC |
| Type: | Heterodimer |
| Binding TFs: | UP00150A (Homeobox domain, Homeobox KN domain) UP00236A (Homeobox domain, Homeobox KN domain) UP00250A (Homeobox domain, Homeobox KN domain) UP00223A (Homeobox domain, Homeobox KN domain) UP00584D (Homeobox domain) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00609F (Homeobox domain, 'Paired box' domain, Homeobox KN domain) |
| Binding Motifs: | UP00150A_1 wawrTACATGTAmwwwT UP00223A_1 wrwrTACATGTAawwyw UP00236A_1 wwdrTACATGTAarwkw UP00250A_1 wwwawACATGTwawwkw UP00223A_2 wwdaTACATGTAawwyw UP00584D_2 smysmwatrtryayatrkAwkwd UP00599D_2 wkhwasaCACATwaCAkwaakyk UP00609F_1 wwkykktAyawyayAtarrgkkc |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.