DNA Binding Site

						

			
Accessions: ATTACTAA (UniPROBE 20160601), MA0476.2.16 (JASPAR 2024)

			
Organisms: Saccharomyces cerevisiae, Homo sapiens
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: ATTACTAA
Type: Heterodimer
Binding TFs: UP00327A (bZIP transcription factor, Transcription factor PAP1)
UP00453A (bZIP transcription factor, Transcription factor PAP1)
UP00473A (bZIP transcription factor)
P01100 (bZIP transcription factor, Basic region leucine zipper)
P01100
Binding Motifs: UP00327A_1 mkktkmTTACGTAAkmymvt
UP00453A_1 / UP00453A_2 ttswwwgATTAsTAATmdwavwr
UP00453A_3 ATTACGTAA
UP00473A_1 / UP00473A_2 gsmmamtATTACGTAAtgsmryc
UP00473A_3 ATTAcTAAT
MA0476.2 TGAsTCAT
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]


Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson M.I, Ticoll A, Snoddy J, Wasserman W.W. PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation. Genome biology 8:R207 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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