DNA Binding Site

Accessions: MA1110.3.1 (JASPAR 2024), MA1110.3.10 (JASPAR 2024), MA1110.3.11 (JASPAR 2024), MA1110.3.12 (JASPAR 2024), MA1110.3.13 (JASPAR 2024), MA1110.3.14 (JASPAR 2024), MA1110.3.16 (JASPAR 2024), MA1110.3.17 (JASPAR 2024), MA1110.3.18 (JASPAR 2024), MA1110.3.19 (JASPAR 2024), MA1110.3.2 (JASPAR 2024), MA1110.3.4 (JASPAR 2024), MA1110.3.5 (JASPAR 2024), MA1110.3.6 (JASPAR 2024), MA1110.3.7 (JASPAR 2024), MA1110.3.8 (JASPAR 2024), MA1110.3.9 (JASPAR 2024), MA1996.2.1 (JASPAR 2024), MA1996.2.11 (JASPAR 2024), MA1996.2.12 (JASPAR 2024), MA1996.2.13 (JASPAR 2024), MA1996.2.14 (JASPAR 2024), MA1996.2.16 (JASPAR 2024), MA1996.2.17 (JASPAR 2024), MA1996.2.19 (JASPAR 2024), MA1996.2.2 (JASPAR 2024), MA1996.2.20 (JASPAR 2024), MA1996.2.3 (JASPAR 2024), MA1996.2.4 (JASPAR 2024), MA1996.2.9 (JASPAR 2024), MA2337.1.1 (JASPAR 2024), MA2337.1.10 (JASPAR 2024), MA2337.1.11 (JASPAR 2024), MA2337.1.13 (JASPAR 2024), MA2337.1.14 (JASPAR 2024), MA2337.1.15 (JASPAR 2024), MA2337.1.17 (JASPAR 2024), MA2337.1.19 (JASPAR 2024), MA2337.1.2 (JASPAR 2024), MA2337.1.20 (JASPAR 2024), MA2337.1.3 (JASPAR 2024), MA2337.1.4 (JASPAR 2024), MA2337.1.5 (JASPAR 2024), MA2337.1.8 (JASPAR 2024), MA2337.1.9 (JASPAR 2024), UN0735.1.17 (JASPAR 2024), UN0735.1.19 (JASPAR 2024), UN0735.1.20 (JASPAR 2024), UN0735.1.4 (JASPAR 2024), UN0735.1.5 (JASPAR 2024), UN0735.1.6 (JASPAR 2024), UN0735.1.7 (JASPAR 2024), UN0735.1.9 (JASPAR 2024)
Organisms: Mus musculus, Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 6
Sequence: AGGTCA
Type: Heterodimer
Binding TFs: Q60641 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Q9Z0Y9 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Q10902
Q60641
Q9Z0Y9
Binding Motifs: MA1110.3 AGGTCA
MA1996.2 AGGTCA
MA2337.1 AGGkCA
UN0735.1 AGGTCA
Publications: Hoeke MO, Heegsma J, Hoekstra M, Moshage H, Faber KN. Human FXR regulates SHP expression through direct binding to an LRH-1 binding site, independent of an IR-1 and LRH-1. PLoS One : (2014). [Pubmed]

Penvose A, Keenan JL, Bray D, Ramlall V, Siggers T. Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity. Nat Commun 10:2514 (2019). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.