DNA Binding Site
| Accessions: | ATTAATGA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTAATGA |
| Type: | Heterodimer |
| Binding TFs: | UP00127A (Homeobox domain) UP00263A (Homeobox domain) UP00113A (Homeobox domain) UP00121A (Homeobox domain) UP00124A (Homeobox domain) UP00137A (Homeobox domain) UP00140A (Homeobox domain) UP00144A (Homeobox domain) UP00168A (Homeobox domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00182A (Homeobox domain) UP00189A (Homeobox domain) UP00196A (Homeobox domain) UP00197A (Homeobox domain) UP00200A (Homeobox domain) UP00206A (Homeobox domain) UP00213A (Homeobox domain) UP00214A (Homeobox domain) UP00218A (Homeobox domain) UP00225A (Homeobox domain) UP00238A (Homeobox domain) UP00241A (Homeobox domain) UP00252A (Homeobox domain) UP00255A (Homeobox domain) UP00259A (Homeobox domain) UP00260A (Homeobox domain) UP00164A (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00595A (Homeobox domain) UP00595B (Homeobox domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00259A_1 wwtksgTAATTACsdy UP00200A_2 rrtwATTAATKAykyc UP00255A_1 twrttaATTAwtaawwr UP00113A_1 CgmrTTAATTAAywawm UP00140A_2 ywarGTCGTAAAawyht UP00121A_1 / UP00140A_1 mrkgyAATAAAAtwwww UP00124A_1 marsTAATTAgywcAt UP00127A_1 asryTAATTAgyysAk UP00137A_1 wravcTMATKAgykrrw UP00140A_5 wraryTAATTArytgkw UP00144A_1 cgmrTTAATTAAtwahy UP00164A_1 sgmrtTAATTAatwagc UP00168A_1 taadTAATTAATrgctw UP00175A_1 csyayTAATTArtymcy UP00140A_3 ywavGTCGTAAAatywt UP00140A_4 mwwyyAATAAAAhymh UP00182A_1 amgkTAATTACcymak UP00189A_1 amgkTAATTAscwmar UP00196A_1 grttrtTAATTAackbg UP00197A_1 rkagGTMATWAAyydk UP00200A_1 gmwwATTAATTAmyybg UP00206A_1 stakTAATTAmtkshr UP00213A_1 rcggycATwAAAwtadw UP00214A_1 amgkTAATTAschmat UP00218A_1 bktmAtTAATkAakwm UP00225A_1 cmaTAATTrATTAym UP00238A_1 gawwwTTAATKAmtkyk UP00241A_1 ytgrgkTAATTAmcst UP00252A_1 cgmrtTAATTAatwayt UP00260A_1 yrarkTAATTAmtwamw UP00263A_1 wsykGyAATTAAtarw UP00164A_2 kkmkTAATTAmkggmm UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00595A_1 TdanrbbrTAATTAytrywawww UP00595B_1 wamktwTAATywATTAtartttt UP00595B_2 ttmyyargTAATTAcydwtwwA UP00613B_2 ykwmrwctTAATTAaratysrr UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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