DNA Binding Site
| Accessions: | GCCAATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GCCAATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00115A (Homeobox domain, Homeobox KN domain) UP00120A (Homeobox domain) UP00145A (Homeobox domain) UP00152A (Homeobox domain) UP00156A (Homeobox domain) UP00178A (Homeobox domain) UP00187A (Homeobox domain) UP00253A (Homeobox domain) UP00506A (Homeobox domain) UP00584C (Homeobox domain) UP00584F (Homeobox domain) UP00594A (Homeobox domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00598A (Homeobox domain) UP00598B (Homeobox domain) UP00603C (Homeobox domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) |
| Binding Motifs: | UP00115A_1 waaayTAATTArykmhs UP00120A_1 tgmayYAATTRryksrr UP00145A_1 aamAAcCAATTAAswh UP00152A_1 gtscryTAATTArtksw UP00156A_1 vmagACyAATTAgykht UP00178A_1 cgsryyAATTrrkways UP00187A_1 cgcryTAATTArthasc UP00253A_1 wscayYAATTRryssmy UP00506A_1 amkwgvryyAATTrrcksacyw UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584F_1 amgatrayTAATTArygsbgcm UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00594A_1 gkscscryTAATTArymmgcgg UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00598A_1 mctwkrsCTAATTAGagcmssg UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00603C_1 awwsydrACYAATTAdsgcmdy UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609B_1 kawmktTAATCGATTAmyrrad UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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