DNA Binding Site
| Accessions: | ATTAATAG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTAATAG |
| Type: | Heterodimer |
| Binding TFs: | UP00164A (Homeobox domain) UP00595A (Homeobox domain) UP00597B (Homeobox domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00164A_1 sgmrtTAATTAatwagc UP00164A_2 kkmkTAATTAmkggmm UP00595A_1 TdanrbbrTAATTAytrywawww UP00597B_1 tksmrytyaATAAAAwwcdmtt UP00613B_2 ykwmrwctTAATTAaratysrr UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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