DNA Binding Site
| Accessions: | CCACTTGA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CCACTTGA |
| Type: | Heterodimer |
| Binding TFs: | UP00119A (Homeobox domain) UP00147A (Homeobox domain) UP00190A (Homeobox domain) UP00249A (Homeobox domain) UP00396A (Homeobox domain) UP00511A (Homeobox domain) UP00604A (Homeobox domain) UP00604B (Homeobox domain) UP00604C (Homeobox domain) UP00605A (Homeobox domain) UP00605B (Homeobox domain) |
| Binding Motifs: | UP00119A_1 wttwrAGTACTyrAaty UP00147A_1 trAkCCACTTrAvwtt UP00190A_1 yyTtAAGYRCTTaatg UP00249A_1 hrakCCACTTrAawty UP00396A_1 / UP00396A_2 tsdywrrCCACTTsAmawtwmk UP00511A_1 aagrcwtawCCACTTAwrwwymA UP00604A_1 mwawtwwAAGYRCTTAAawyyw UP00604B_1 twykawrCCACTTrAmwttrsm UP00604C_1 mwawtwwAAGYRCTTAAawyyw UP00605A_1 twwrrrdCCACTyGAvwtysks UP00605B_1 twtrrrkCCACTygAvwtygks |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.