DNA Binding Site
| Accessions: | CCAGCTGC (UniPROBE 20160601), MA0500.3.13 (JASPAR 2024), MA0500.3.16 (JASPAR 2024), MA0500.3.9 (JASPAR 2024), MA1619.2.2 (JASPAR 2024), MA2295.1.14 (JASPAR 2024), UN0733.1.14 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Drosophila melanogaster, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCAGCTGC |
| Type: | Heterodimer |
| Binding TFs: | P15173 (Helix-loop-helix DNA-binding domain, Myogenic Basic domain) UP00099A (Helix-loop-helix DNA-binding domain) Q9QX98 (Helix-loop-helix DNA-binding domain) P10083 P15173 Q11094 Q9QX98 |
| Binding Motifs: | UP00099A_1 ytyarCAGCTGCtvytk UP00099A_2 bymwcCCcryccyrty MA0500.3 rCAGCTGy MA1619.2 aCAGCTGt MA2295.1 gCAGCTGc UN0733.1 cCAGmTGg |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Cao Y, Kumar R.M, Penn B.H, Berkes C.A, Kooperberg C, Boyer L.A, Young R.A, Tapscott S.J. Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters. The EMBO journal 25:502-11 (2006). [Pubmed] Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE. Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Mol Cell Biol 33:3166-79 (2013). [Pubmed] Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife : (2015). [Pubmed] |
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