DNA Binding Site
| Accessions: | GCCGACAA (UniPROBE 20160601), MA1669.2.5 (JASPAR 2024), MA1670.2.1 (JASPAR 2024), MA1670.2.10 (JASPAR 2024), MA1670.2.12 (JASPAR 2024), MA1670.2.13 (JASPAR 2024), MA1670.2.6 (JASPAR 2024), MA1692.2.12 (JASPAR 2024), MA1692.2.15 (JASPAR 2024), MA1692.2.18 (JASPAR 2024), MA1692.2.2 (JASPAR 2024) |
| Organisms: | Arabidopsis lyrata, Arabidopsis thaliana, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCCGACAA |
| Type: | Heterodimer |
| Binding TFs: | P93835 (AP2 domain) Q9SYS6 (AP2 domain) UP00555A (AP2 domain) D9HNV6 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV6 P93835 Q9SYS6 |
| Binding Motifs: | UP00555A_1 kkkrvtsATGTCGGCrrsgrtw UP00555A_2 kksavwgATGTCGGCrrkgakw UP00555A_3 kskrsysATGTCGGCrrsgkwg UP00555A_4 kkkrvysATGTCGRCgvkgsbh UP00555A_5 dkyrmwrATGTCGRCrvkgvty UP00555A_6 bgksgysATGTCGrCgmdgssr MA1669.2 RCCGACAT MA1670.2 RCCGACAt MA1692.2 GCCGACAA |
| Publications: | Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). [Pubmed] Kim M. J., Lee T. H., Pahk Y. M., Kim Y. H., Park H. M., Choi Y. D., Nahm B. H., Kim Y. K. Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.. BMC Mol. Biol. 10:91 (2009). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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