DNA Binding Site
| Accessions: | ATAATTGG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAATTGG |
| Type: | Heterodimer |
| Binding TFs: | UP00115A (Homeobox domain, Homeobox KN domain) UP00120A (Homeobox domain) UP00136A (Homeobox domain, Homeobox KN domain) UP00149A (Homeobox domain) UP00156A (Homeobox domain) UP00166A (Homeobox domain) UP00171A (Homeobox domain) UP00178A (Homeobox domain) UP00221A (Homeobox domain) UP00230A (Homeobox domain) UP00506A (Homeobox domain) UP00507A (Homeobox domain) UP00584C (Homeobox domain) UP00584F (Homeobox domain) UP00588A (Homeobox domain) UP00594A (Homeobox domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00598A (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00603C (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00614A (Homeobox domain) UP00614B (Homeobox domain) UP00614C (Homeobox domain) UP00614D (Homeobox domain) UP00614E (Homeobox domain) UP00619B (Homeobox domain, Homeobox KN domain) UP00619C (Homeobox domain, Homeobox KN domain) UP00625A (Homeobox domain) UP00625D (Homeobox domain) |
| Binding Motifs: | UP00115A_1 waaayTAATTArykmhs UP00120A_1 tgmayYAATTRryksrr UP00136A_1 wvmrYTAATTARygrwr UP00149A_1 vrkaaTTAATTAAyrsg UP00156A_1 vmagACyAATTAgykht UP00166A_1 aamAAcCAATTArkwc UP00171A_1 mamAAcyAATTAAktw UP00178A_1 cgsryyAATTrrkways UP00221A_1 yrkmAyTAATTAryrv UP00230A_1 ssrgyAATTrsykmts UP00506A_1 amkwgvryyAATTrrcksacyw UP00507A_1 tarcrsCrCyAATTAgygywyy UP00584C_1 aakwkcgCTAATTAGybsrygy UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00588A_1 mahrgcGCTAATTAGygcswGm UP00594A_1 gkscscryTAATTArymmgcgg UP00594A_2 ryrtkwrCyAATTrGtbgwmgw UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_1 kkycscryTAATTArtmakcsg UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00598A_2 makkcmaACYAATTAdswsdky UP00598B_2 gkcmscryTAATTArkvhkssb UP00603A_1 mtwyaaaAAcCAATTAacwmray UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_2 ssgksgcAkYAATTAskmmymya UP00603C_1 awwsydrACYAATTAdsgcmdy UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609A_1 ctmwrkTAATCGATTAdckwtc UP00609B_1 kawmktTAATCGATTAmyrrad UP00609C_1 krwmktTAATCGATTActrgmd UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00614B_1 wsvgakssTAATTAgsmawwwmw UP00614C_1 wwmwchkcAkTAATTAkscrtaw UP00614D_1 wwmwymkcAkTAATTAbcCrtmw UP00614E_1 wbmrwkgvtrATyakcmwwwwmw UP00619B_1 rwrtdTwwtyyAATTArkwywaw UP00619C_1 AwgtwTAATyTAATTAwtwkwg UP00625A_1 wAgrkkgCTAATTAGbsvyykw UP00625D_1 aAkrtsrCTAATTAGcgrthgw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.