DNA Binding Site
| Accessions: | 1qn3_E (3D-footprint 20231221), 6njq_C (3D-footprint 20231221), 6uep_E (3D-footprint 20231221), 6uer_C (3D-footprint 20231221) |
| Organisms: | Arabidopsis thaliana |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 14 |
| Sequence: | GCTATAAACGGGCA |
| Type: | Heterodimer |
| Binding TFs: | 1qn3_B / 6njq_A / 6uer_A (Transcription factor TFIID (or TATA-binding protein, TBP)) 6uep_B (Transcription factor TFIID (or TATA-binding protein, TBP)) |
| Binding Motifs: | 1qn3_B TATAAaCg 6njq_A GTTTATA 6uep_B cCtTTATA 6uer_A cCtTTATA |
| Publications: | Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed] Stelling AL, Liu AY, Zeng W, Salinas R, Schumacher MA, Al-Hashimi HM. Infrared Spectroscopic Observation of a G-C(+) Hoogsteen Base Pair in the DNA:TATA-Box Binding Protein Complex Under Solution Conditions. Angew Chem Int Ed Engl 58:12010-12013 (2019). [Pubmed] Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature 587:291-296 (2020). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.