DNA Binding Site
| Accessions: | ATATTAAT (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATATTAAT |
| Type: | Heterodimer |
| Binding TFs: | UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00268A (Homeobox domain) UP00584E (Homeobox domain) UP00595C (Homeobox domain) UP00610B (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00118A_1 wrtwATTAATkArkyc UP00268A_1 cgyddwtTAATTAawksgrm UP00584E_1 tkacggwtTAATTAatywtckk UP00595C_1 TwasksyATAATTAtwGgtwkdr UP00595C_2 aakwywATaTATAyATwwhamw UP00610B_1 twwwkcbkttTAATTAasmasgk UP00613B_1 aakrbywcTAATTAgwrcymsh UP00616A_1 ykwrytwATTATGCAkaywkhm UP00616B_1 hkwrythATTATGCRgayakhm UP00616D_1 tkwryyhATTATGCrkryakhm UP00617A_1 TawArtTTATTAATAhttwwab UP00617B_1 twrmrtwTATTAATAwwbwtay UP00617D_1 thravkTTATTAATAwtktmak |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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