DNA Binding Site
| Accessions: | AATTAGTG (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | AATTAGTG |
| Type: | Heterodimer |
| Binding TFs: | UP00131A (Homeobox domain) UP00220A (Homeobox domain) UP00237A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00610A (Homeobox domain, 'Paired box' domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) |
| Binding Motifs: | UP00131A_1 dscrCTAATTAGysrkt UP00220A_1 wgmrcyAATTrgyGsgr UP00237A_1 cryarTTAATTAAykkg UP00247A_1 wsawyTAATTAryysdm UP00610A_1 kywsrksskCTAATTArkgcwmT UP00610A_2 aAkwrccyTAATTArmhsmhbw UP00610A_3 wwkrmycaATTAATtwgkkcdc UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_1 varwsgcytAATTarkccmwwk UP00610D_2 aakwgshyTAATTArygsackw UP00613B_1 aakrbywcTAATTAgwrcymsh |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.