DNA Binding Site
| Accessions: | CCAATTAA (UniPROBE 20160601), MA0650.4.20 (JASPAR 2024), MA0650.4.7 (JASPAR 2024) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCAATTAA |
| Type: | Heterodimer |
| Binding TFs: | UP00224A (Homeobox domain, 'Paired box' domain) Q62424 (Homeobox domain, Hox protein A13 N terminal) UP00104A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00120A (Homeobox domain) UP00145A (Homeobox domain) UP00152A (Homeobox domain) UP00155A (Homeobox domain) UP00156A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00166A (Homeobox domain) UP00171A (Homeobox domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00178A (Homeobox domain) UP00187A (Homeobox domain) UP00243A (Homeobox domain) UP00253A (Homeobox domain) UP00257A (Homeobox domain) UP00266A (Homeobox domain) UP00157A (Homeobox domain) UP00209A (Homeobox domain, Homeobox KN domain) UP00506A (Homeobox domain) UP00507A (Homeobox domain) UP00584A (Homeobox domain) UP00584B (Homeobox domain) UP00584C (Homeobox domain) UP00584E (Homeobox domain) UP00584F (Homeobox domain) UP00585B (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) UP00588B (Homeobox domain, Homeobox KN domain) UP00594A (Homeobox domain) UP00594B (Homeobox domain) UP00594C (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00603C (Homeobox domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) UP00611G (Homeobox domain, 'Paired box' domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616E (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00619C (Homeobox domain, Homeobox KN domain) UP00625B (Homeobox domain) UP00625C (Homeobox domain) UP00625D (Homeobox domain) UP00626A (Homeobox domain) Q62424 |
| Binding Motifs: | UP00104A_1 msvAGCAATTAAwgvwt UP00115A_1 waaayTAATTArykmhs UP00120A_1 tgmayYAATTRryksrr UP00145A_1 aamAAcCAATTAAswh UP00152A_1 gtscryTAATTArtksw UP00155A_1 acaAgCAATTAAwgvrT UP00156A_1 vmagACyAATTAgykht UP00157A_1 asaAgCAATTAAwrrat UP00163A_1 wgmmyYAATTRrygrah UP00166A_1 aamAAcCAATTArkwc UP00171A_1 mamAAcyAATTAAktw UP00175A_1 csyayTAATTArtymcy UP00178A_1 cgsryyAATTrrkways UP00187A_1 cgcryTAATTArthasc UP00209A_1 cgmryTAATTArtymcy UP00224A_1 TrayTAATTArtkvac UP00243A_1 hmyvCyAATTrGkbgw UP00253A_1 wscayYAATTRryssmy UP00257A_1 ckmsyTAATTArtyrds UP00266A_1 vkaayTAATTAryTast UP00209A_2 crmrTTAATTAAttgrm UP00506A_1 amkwgvryyAATTrrcksacyw UP00507A_1 tarcrsCrCyAATTAgygywyy UP00584A_2 aAgdwcgCyAATTrGckmbtgm UP00584B_2 wtwhtddkmTAATTAvmshwkrw UP00584C_1 aakwkcgCTAATTAGybsrygy UP00584C_2 kavwsrsCyAATTrGyysmrka UP00584E_1 tkacggwtTAATTAatywtckk UP00584E_2 wymdwkgkTAATTAwcmwatwaw UP00584F_1 amgatrayTAATTArygsbgcm UP00584F_2 mAkrdyrCyAATTrGckrwtgm UP00585B_1 wywmtskkyTAATTAhmmkrkda UP00588B_1 tcakvkGyTAATTAgChaAdwma UP00594A_1 gkscscryTAATTArymmgcgg UP00594A_2 ryrtkwrCyAATTrGtbgwmgw UP00594B_1 rcrwrdsCYAATTRGtkgwwsw UP00594C_1 kkycscryTAATTArtmakcsg UP00594C_2 wmakhtgcyAATTrrcmwrwwhw UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00598B_2 gkcmscryTAATTArkvhkssb UP00603A_1 mtwyaaaAAcCAATTAacwmray UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00603B_2 ssgksgcAkYAATTAskmmymya UP00603C_1 awwsydrACYAATTAdsgcmdy UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609B_1 kawmktTAATCGATTAmyrrad UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_1 varwsgcytAATTarkccmwwk UP00610D_2 aakwgshyTAATTArygsackw UP00611G_1 taTkkatgtgTGCAcacdkmygh UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00616E_1 kgmcgyyyTAATTArwcakcrg UP00619C_1 AwgtwTAATyTAATTAwtwkwg UP00625B_1 wAgdkbrCTAATTAGysryhgw UP00625C_1 wtmkmgGcTAATTArCmmAwwaw UP00625D_1 aAkrtsrCTAATTAGcgrthgw UP00626A_1 wtmcryrYTAATTARkrrwgrg MA0650.4 CCAATAAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Knosp W. M., Saneyoshi C., Shou S., Bachinger H. P., Stadler H. S. Elucidation, quantitative refinement, and in vivo utilization of the HOXA13 DNA binding site.. J. Biol. Chem. 282:6843-6853 (2007). [Pubmed] |
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