DNA Binding Site
| Accessions: | ATTATGCA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTATGCA |
| Type: | Heterodimer |
| Binding TFs: | UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00129A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00158A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00211A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00399A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617C (Homeobox domain, Pou domain - N-terminal to homeobox domain) |
| Binding Motifs: | UP00105A_1 rmttAATTAATTAadtc UP00129A_1 rmyTAATTAATTAaktm UP00158A_1 rrwtAATTAATTAwgtc UP00179A_1 ttkTATGCWAATkara UP00191A_1 ywkTATGCWAATkara UP00211A_1 wardTATGCATAwtdwa UP00254A_1 dtdwrwTAATTArktw UP00399A_1 ywwradwTwTGCAwAwtsarwm UP00616A_1 ykwrytwATTATGCAkaywkhm UP00616B_1 hkwrythATTATGCRgayakhm UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00616D_1 tkwryyhATTATGCrkryakhm UP00617C_1 ytddwwtTATGCATAwwadarw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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