DNA Binding Site
| Accessions: | ATAATTGA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAATTGA |
| Type: | Heterodimer |
| Binding TFs: | UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00157A (Homeobox domain) UP00584E (Homeobox domain) UP00595B (Homeobox domain) UP00595C (Homeobox domain) UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain) |
| Binding Motifs: | UP00157A_1 asaAgCAATTAAwrrat UP00248A_1 mgwmyTAATTArkwmda UP00584E_1 tkacggwtTAATTAatywtckk UP00595B_2 ttmyyargTAATTAcydwtwwA UP00595C_1 TwasksyATAATTAtwGgtwkdr UP00609B_1 kawmktTAATCGATTAmyrrad UP00609D_1 katckwTAATCGATTAmyrsak UP00609E_1 kawmktTAATCGATTActrgad UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00609H_1 kawmktTAATCGATTAcyksad |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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