DNA Binding Site
| Accessions: | ATAAATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAAATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00255A (Homeobox domain) UP00268A (Homeobox domain) UP00274A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00594D (Homeobox domain) UP00595B (Homeobox domain) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00627B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Motifs: | UP00255A_1 twrttaATTAwtaawwr UP00268A_1 cgyddwtTAATTAawksgrm UP00274A_1 ttsmmaYTAATTARwwwmks UP00294A_1 tkacctwtAATTawaybwsmw UP00594D_1 yagmhskaymwraawmsmcwaw UP00595B_1 wamktwTAATywATTAtartttt UP00599D_1 TamtwwTAATawATTAtbtwtm UP00627B_1 TwtTwawATAmAwATAAwwTwkG |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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