footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Site

Accessions:	AATTAATT (UniPROBE 20160601)
Organisms:	Mus musculus, Saccharomyces cerevisiae, Homo sapiens
Libraries:	UniPROBE 20160601 ¹ ¹ Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length:	8
Sequence:	AATTAATT
Type:	Heterodimer
Binding TFs:	UP00224A (Homeobox domain, 'Paired box' domain) UP00127A (Homeobox domain) UP00078A (ARID/BRIGHT DNA binding domain) UP00108A (Homeobox domain) UP00115A (Homeobox domain, Homeobox KN domain) UP00116A (Homeobox domain) UP00118A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00120A (Homeobox domain) UP00128A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00130A (Homeobox domain, Homeobox KN domain) UP00136A (Homeobox domain, Homeobox KN domain) UP00141A (Homeobox domain) UP00142A (Homeobox domain) UP00149A (Homeobox domain) UP00152A (Homeobox domain) UP00156A (Homeobox domain) UP00163A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00167A (Homeobox domain, Engrailed homeobox C-terminal signature domain) UP00169A (Homeobox domain, Homeobox KN domain) UP00171A (Homeobox domain) UP00172A (Homeobox domain, Homeobox KN domain) UP00175A (Homeobox domain, Homeobox KN domain) UP00179A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00184A (Homeobox domain, Homeobox KN domain) UP00187A (Homeobox domain) UP00188A (Homeobox domain, Homeobox KN domain) UP00191A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00200A (Homeobox domain) UP00202A (Homeobox domain) UP00204A (Homeobox domain) UP00211A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00212A (Homeobox domain, Homeobox KN domain) UP00214A (Homeobox domain) UP00218A (Homeobox domain) UP00221A (Homeobox domain) UP00230A (Homeobox domain) UP00234A (Homeobox domain) UP00237A (Homeobox domain) UP00238A (Homeobox domain) UP00242A (Homeobox domain) UP00243A (Homeobox domain) UP00244A (Homeobox domain) UP00247A (Homeobox domain, 'Paired box' domain) UP00251A (Homeobox domain) UP00252A (Homeobox domain) UP00254A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00257A (Homeobox domain) UP00261A (Homeobox domain, Homeobox KN domain) UP00262A (Homeobox domain, Homeobox KN domain) UP00266A (Homeobox domain) UP00268A (Homeobox domain) UP00274A (Homeobox domain) UP00294A (SRF-type transcription factor (DNA-binding and dimerisation domain)) UP00341A UP00209A (Homeobox domain, Homeobox KN domain) UP00256A (Homeobox domain, Homeobox KN domain) UP00584A (Homeobox domain) UP00584C (Homeobox domain) UP00584F (Homeobox domain) UP00598A (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00603C (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00610A (Homeobox domain, 'Paired box' domain) UP00610B (Homeobox domain, 'Paired box' domain) UP00610C (Homeobox domain, 'Paired box' domain) UP00610D (Homeobox domain, 'Paired box' domain) UP00613B (Homeobox domain, Homeobox KN domain) UP00614A (Homeobox domain) UP00615D (Homeobox domain) UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00617D (Homeobox domain, Pou domain - N-terminal to homeobox domain) UP00619A (Homeobox domain, Homeobox KN domain) UP00619B (Homeobox domain, Homeobox KN domain) UP00619C (Homeobox domain, Homeobox KN domain) UP00623B (Homeobox domain) UP00626A (Homeobox domain) UP00626C (Homeobox domain)
Binding Motifs:	UP00200A_2 rrtwATTAATKAykyc UP00078A_1 sgktTTAATTAAwmtwy UP00108A_1 wawayTAATTAryTsav UP00115A_1 waaayTAATTArykmhs UP00116A_1 wrcmyTAATTArtkswy UP00118A_1 wrtwATTAATkArkyc UP00120A_1 tgmayYAATTRryksrr UP00127A_1 asryTAATTAgyysAk UP00128A_1 swtAaTTAATTArkkyr UP00130A_1 sdaaTTAATTAAwwmmk UP00136A_1 wvmrYTAATTARygrwr UP00141A_1 csaryTAATTAryratt UP00142A_1 vataaTTAATTAAygsg UP00149A_1 vrkaaTTAATTAAyrsg UP00152A_1 gtscryTAATTArtksw UP00156A_1 vmagACyAATTAgykht UP00163A_1 wgmmyYAATTRrygrah UP00167A_1 gsvAAcTAATTArkgc UP00169A_1 rrwwwTTAATTAAtwyb UP00171A_1 mamAAcyAATTAAktw UP00172A_1 cgmrTTAATTAAkwdac UP00175A_1 csyayTAATTArtymcy UP00179A_1 ttkTATGCWAATkara UP00184A_1 wmmvCTAATTAGCkgtg UP00187A_1 cgcryTAATTArthasc UP00188A_1 sgawTTAATTAAwwwyy UP00191A_1 ywkTATGCWAATkara UP00200A_1 gmwwATTAATTAmyybg UP00202A_1 btgarrTAATTAay UP00204A_1 wdsmaCYAATTRGtgbw UP00209A_1 cgmryTAATTArtymcy UP00211A_1 wardTATGCATAwtdwa UP00212A_1 sraaTTAATTAAwwamy UP00214A_1 amgkTAATTAschmat UP00218A_1 bktmAtTAATkAakwm UP00221A_1 yrkmAyTAATTAryrv UP00224A_1 TrayTAATTArtkvac UP00230A_1 ssrgyAATTrsykmts UP00234A_1 krmwayTAATTAatwm UP00237A_1 cryarTTAATTAAykkg UP00238A_1 gawwwTTAATKAmtkyk UP00242A_1 twkrrgTAATTAhykt UP00243A_1 hmyvCyAATTrGkbgw UP00244A_1 kwatyAATTAATaayww UP00247A_1 wsawyTAATTAryysdm UP00251A_1 wwycryTAATTArtksw UP00252A_1 cgmrtTAATTAatwayt UP00254A_1 dtdwrwTAATTArktw UP00256A_1 swrcryTAATTArkkyw UP00257A_1 ckmsyTAATTArtyrds UP00261A_1 kaaaCTAATTAGstwtg UP00262A_1 mgwaTTAATTAAwwahk UP00266A_1 vkaayTAATTAryTast UP00268A_1 cgyddwtTAATTAawksgrm UP00274A_1 ttsmmaYTAATTARwwwmks UP00294A_1 tkacctwtAATTawaybwsmw UP00341A_1 ryarwwAWwWWwWTwywawm UP00078A_2 hmmvrtATcrdrtyk UP00209A_2 crmrTTAATTAAttgrm UP00256A_2 wmcrCTAATTAGcggwk UP00584A_1 trhatvsyTAATTArktwtmtt UP00584C_1 aakwkcgCTAATTAGybsrygy UP00584F_1 amgatrayTAATTArygsbgcm UP00598A_1 mctwkrsCTAATTAGagcmssg UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00603B_2 ssgksgcAkYAATTAskmmymya UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609A_1 ctmwrkTAATCGATTAdckwtc UP00610A_1 kywsrksskCTAATTArkgcwmT UP00610A_3 wwkrmycaATTAATtwgkkcdc UP00610B_1 twwwkcbkttTAATTAasmasgk UP00610C_1 aakwsswyTAATTArygsacbw UP00610C_2 aakwgswyTAATTArygsacbw UP00610D_2 aakwgshyTAATTArygsackw UP00613B_1 aakrbywcTAATTAgwrcymsh UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00615D_1 twyktwwmsTAATTAykmmcawa UP00616A_1 ykwrytwATTATGCAkaywkhm UP00616B_1 hkwrythATTATGCRgayakhm UP00616C_1 kgacgyyyTAATTArwcrtcrr UP00617D_1 thravkTTATTAATAwtktmak UP00619A_1 wAytkTAATywAATTAkyTdag UP00619B_1 rwrtdTwwtyyAATTArkwywaw UP00619C_1 AwgtwTAATyTAATTAwtwkwg UP00623B_2 whatskGyTAATTAsCycAdtar UP00626A_1 wtmcryrYTAATTARkrrwgrg UP00626C_1 tmmmamvTTAATTAAkwrtmtg
Publications:	Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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