DNA Binding Site
| Accessions: | GGGTATCA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GGGTATCA |
| Type: | Heterodimer |
| Binding TFs: | UP00199A (Homeobox domain, Homeobox KN domain) UP00232A (Homeobox domain) UP00509A (Homeobox domain, Homeobox KN domain, Homeodomain leucine-zipper encoding, Homez) UP00620A (Homeobox domain, Homeobox KN domain) UP00620B (Homeobox domain, Homeobox KN domain) UP00620C (Homeobox domain, Homeobox KN domain) |
| Binding Motifs: | UP00199A_1 atrmaTGACACCthybr UP00232A_1 wwawTAGATACCCywTw UP00509A_1 ywmarrywTGACACCymbhwrw UP00620A_1 mwkrakGTATCAwtkayycGrg UP00620A_2 gwrrakrrgRTATCAmwtrtdw UP00620B_1 wtawhakrgrTATCAwwTAmym UP00620B_2 rwrrwdrrgRTATCAhtyrtkm UP00620C_1 kwvrwwrrgGTATCAmttrtgm UP00620C_2 wrmktwrwGRTAYCwmdyrayk |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.