DNA Binding Site

						

			
Accessions: ATCAATTA (UniPROBE 20160601)

			
Organisms: Mus musculus, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ATCAATTA
Type: Heterodimer
Binding TFs: UP00224A (Homeobox domain, 'Paired box' domain)
UP00012A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00104A (Homeobox domain)
UP00138A (Homeobox domain)
UP00142A (Homeobox domain)
UP00145A (Homeobox domain)
UP00155A (Homeobox domain)
UP00166A (Homeobox domain)
UP00170A (Homeobox domain, Homeobox KN domain)
UP00178A (Homeobox domain)
UP00181A (Homeobox domain)
UP00218A (Homeobox domain)
UP00234A (Homeobox domain)
UP00243A (Homeobox domain)
UP00244A (Homeobox domain)
UP00248A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00255A (Homeobox domain)
UP00257A (Homeobox domain)
UP00157A (Homeobox domain)
UP00584A (Homeobox domain)
UP00584C (Homeobox domain)
UP00584E (Homeobox domain)
UP00594A (Homeobox domain)
UP00594B (Homeobox domain)
UP00594C (Homeobox domain)
UP00595A (Homeobox domain)
UP00595B (Homeobox domain)
UP00596C (Homeobox domain)
UP00598A (Homeobox domain)
UP00603A (Homeobox domain)
UP00603B (Homeobox domain)
UP00603C (Homeobox domain)
UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609B (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609D (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609E (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00609H (Homeobox domain, 'Paired box' domain, Homeobox KN domain)
UP00611A (Homeobox domain, 'Paired box' domain)
UP00611D (Homeobox domain, 'Paired box' domain)
UP00614E (Homeobox domain)
UP00619B (Homeobox domain, Homeobox KN domain)
UP00619C (Homeobox domain, Homeobox KN domain)
UP00624B (Homeobox domain)
UP00625A (Homeobox domain)
UP00625B (Homeobox domain)
Binding Motifs: UP00255A_1 twrttaATTAwtaawwr
UP00012A_1 taaTTCAwTGAAswd
UP00104A_1 msvAGCAATTAAwgvwt
UP00138A_1 vmrgyAATTrsytsAd
UP00142A_1 vataaTTAATTAAygsg
UP00145A_1 aamAAcCAATTAAswh
UP00155A_1 acaAgCAATTAAwgvrT
UP00157A_1 asaAgCAATTAAwrrat
UP00166A_1 aamAAcCAATTArkwc
UP00170A_1 mhmaAyymMTTAakwy
UP00178A_1 cgsryyAATTrrkways
UP00181A_1 marsyAATTrsygaaw
UP00218A_1 bktmAtTAATkAakwm
UP00224A_1 TrayTAATTArtkvac
UP00234A_1 krmwayTAATTAatwm
UP00243A_1 hmyvCyAATTrGkbgw
UP00244A_1 kwatyAATTAATaayww
UP00248A_1 mgwmyTAATTArkwmda
UP00257A_1 ckmsyTAATTArtyrds
UP00012A_2 tvwybGTTAACaswkrr
UP00584A_2 aAgdwcgCyAATTrGckmbtgm
UP00584C_1 aakwkcgCTAATTAGybsrygy
UP00584E_1 tkacggwtTAATTAatywtckk
UP00584E_2 wymdwkgkTAATTAwcmwatwaw
UP00594A_1 gkscscryTAATTArymmgcgg
UP00594B_1 rcrwrdsCYAATTRGtkgwwsw
UP00594C_1 kkycscryTAATTArtmakcsg
UP00595A_1 TdanrbbrTAATTAytrywawww
UP00595A_2 ttmyywrrTAATTAyyawtwwA
UP00595B_1 wamktwTAATywATTAtartttt
UP00595B_2 ttmyyargTAATTAcydwtwwA
UP00596C_1 kkcsrmgtTAATTAakmatcgg
UP00596C_2 wtmtawGkTAATTAhChhAdwaa
UP00598A_2 makkcmaACYAATTAdswsdky
UP00603A_1 mtwyaaaAAcCAATTAacwmray
UP00603A_2 bwyraaaacYAATTAaywhwmby
UP00603B_1 wtwtrtgyAATTAwttaaktysw
UP00603C_1 awwsydrACYAATTAdsgcmdy
UP00603C_2 ydmmayrCyAATTrGtmwtyrs
UP00609A_1 ctmwrkTAATCGATTAdckwtc
UP00609B_1 kawmktTAATCGATTAmyrrad
UP00609C_1 krwmktTAATCGATTActrgmd
UP00609D_1 katckwTAATCGATTAmyrsak
UP00609E_1 kawmktTAATCGATTActrgad
UP00609G_1 kawmkyTAATCGATTAmyrkmd
UP00609H_1 kawmktTAATCGATTAcyksad
UP00611A_2 tymwakgkTAATTArcatdwwmw
UP00611D_1 whwydkgkTAATTAkcawawwaw
UP00614E_1 wbmrwkgvtrATyakcmwwwwmw
UP00619B_1 rwrtdTwwtyyAATTArkwywaw
UP00619C_1 AwgtwTAATyTAATTAwtwkwg
UP00624B_1 trvgwbgsTaATtAgcmwawwmw
UP00625A_1 wAgrkkgCTAATTAGbsvyykw
UP00625B_1 wAgdkbrCTAATTAGysryhgw
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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