DNA Binding Site
| Accessions: | MA1669.2.13 (JASPAR 2024), MA1669.2.17 (JASPAR 2024), MA1670.2.18 (JASPAR 2024), MA1691.2.1 (JASPAR 2024), MA1691.2.14 (JASPAR 2024), MA1691.2.4 (JASPAR 2024), MA1691.2.5 (JASPAR 2024), MA1692.2.14 (JASPAR 2024) |
| Organisms: | Arabidopsis thaliana, Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCCGACAT |
| Type: | Heterodimer |
| Binding TFs: | P93835 (AP2 domain) Q9SYS6 (AP2 domain) D9HNV4 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV6 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV4 D9HNV6 P93835 Q9SYS6 |
| Binding Motifs: | MA1669.2 RCCGACAT MA1670.2 RCCGACAt MA1691.2 GCAGACAT MA1692.2 GCCGACAA |
| Publications: | Kim M. J., Lee T. H., Pahk Y. M., Kim Y. H., Park H. M., Choi Y. D., Nahm B. H., Kim Y. K. Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.. BMC Mol. Biol. 10:91 (2009). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.