DNA Binding Site
| Accessions: | CAATTAGC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAATTAGC |
| Type: | Heterodimer |
| Binding TFs: | UP00131A (Homeobox domain) UP00166A (Homeobox domain) UP00181A (Homeobox domain) UP00220A (Homeobox domain) UP00243A (Homeobox domain) UP00253A (Homeobox domain) UP00584A (Homeobox domain) UP00594A (Homeobox domain) UP00609C (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00614A (Homeobox domain) UP00614E (Homeobox domain) UP00619B (Homeobox domain, Homeobox KN domain) UP00624A (Homeobox domain) |
| Binding Motifs: | UP00131A_1 dscrCTAATTAGysrkt UP00166A_1 aamAAcCAATTArkwc UP00181A_1 marsyAATTrsygaaw UP00220A_1 wgmrcyAATTrgyGsgr UP00243A_1 hmyvCyAATTrGkbgw UP00253A_1 wscayYAATTRryssmy UP00584A_2 aAgdwcgCyAATTrGckmbtgm UP00594A_2 ryrtkwrCyAATTrGtbgwmgw UP00609C_1 krwmktTAATCGATTActrgmd UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00614E_1 wbmrwkgvtrATyakcmwwwwmw UP00619B_1 rwrtdTwwtyyAATTArkwywaw UP00624A_1 wwmdwkgbTAATTAkcmawwawa |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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