DNA Binding Site
| Accessions: | CGTAATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CGTAATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00123A (Homeobox domain) UP00132A (Homeobox domain) UP00162A (Homeobox domain) UP00174A (Homeobox domain) UP00241A (Homeobox domain) UP00261A (Homeobox domain, Homeobox KN domain) UP00595A (Homeobox domain) UP00614A (Homeobox domain) UP00614B (Homeobox domain) UP00624A (Homeobox domain) |
| Binding Motifs: | UP00123A_1 kkmsTAATTAGkgshv UP00132A_1 ymcmGCTAATTAGckkw UP00162A_1 wvarcTAATTAgygswc UP00174A_1 amggTAATTAscymAd UP00241A_1 ytgrgkTAATTAmcst UP00261A_1 kaaaCTAATTAGstwtg UP00595A_2 ttmyywrrTAATTAyyawtwwA UP00614A_1 tkcrwkrstrATyagyaaawwaa UP00614B_1 wsvgakssTAATTAgsmawwwmw UP00624A_1 wwmdwkgbTAATTAkcmawwawa |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.