DNA Binding Site
| Accessions: | 1o3r_B (3D-footprint 20231221), 1o3s_B (3D-footprint 20231221) |
| Organisms: | Escherichia coli, strain K12 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 11 |
| Sequence: | AAAAATGCGAT |
| Type: | Heterodimer |
| Binding TFs: | 1o3r_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain) 1o3s_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain) |
| Binding Motifs: | 1o3r_A AAntGcGA 1o3s_A TCgc |
| Publications: | Chen S, Vojtechovsky J, Parkinson G.N, Ebright R.H, Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking. Journal of molecular biology 314:63-74 (2001). [Pubmed] Chen S., Gunasekera A., Zhang X., Kunkel TA., Ebright RH., Berman HM. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking. J Mol Biol. 314(1):75-82 (2001). [Pubmed] |
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