DNA Binding Site
| Accessions: | AGGATTAG (UniPROBE 20160601), UN0736.1.14 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AGGATTAG |
| Type: | Heterodimer |
| Binding TFs: | UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00125A (Homeobox domain) UP00143A (Homeobox domain) UP00153A (Homeobox domain) UP00229A (Homeobox domain) UP00265A (Homeobox domain) UP00586A (Homeobox domain) UP00586F (Homeobox domain) UP00615A (Homeobox domain) G5ED66 |
| Binding Motifs: | UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00125A_1 kkwrrGGATTAAthrwy UP00143A_1 rrmrGGGATTAAtyrtc UP00153A_1 tkrrrGGGATTAAmaah UP00229A_1 dgwrgGGATTAAtwtwy UP00265A_1 rggGGGATTAgCtrsc UP00586A_1 wymawygCTAATCCsCttwwdr UP00586F_1 ratmwmAabCGGATTAgbtwwsa UP00615A_1 kyysdtrgGGATTAAtwrkacs UN0736.1 ckGATwAG |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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