DNA Binding Site
| Accessions: | TAATTGGA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | TAATTGGA |
| Type: | Heterodimer |
| Binding TFs: | UP00120A (Homeobox domain) UP00204A (Homeobox domain) UP00506A (Homeobox domain) UP00584C (Homeobox domain) UP00594A (Homeobox domain) UP00598A (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603B (Homeobox domain) UP00603C (Homeobox domain) UP00609A (Homeobox domain, 'Paired box' domain, Homeobox KN domain) |
| Binding Motifs: | UP00120A_1 tgmayYAATTRryksrr UP00204A_1 wdsmaCYAATTRGtgbw UP00506A_1 amkwgvryyAATTrrcksacyw UP00584C_2 kavwsrsCyAATTrGyysmrka UP00594A_1 gkscscryTAATTArymmgcgg UP00598A_2 makkcmaACYAATTAdswsdky UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00603A_2 bwyraaaacYAATTAaywhwmby UP00603B_1 wtwtrtgyAATTAwttaaktysw UP00603B_2 ssgksgcAkYAATTAskmmymya UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609A_1 ctmwrkTAATCGATTAdckwtc |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.