DNA Binding Site
| Accessions: | AAAGAACA (UniPROBE 20160601), MA1823.2.17 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Homo sapiens, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AAAGAACA |
| Type: | Heterodimer |
| Binding TFs: | UP00339A (HSF-type DNA-binding) UP00589E (Fork head domain) B4FDH4 (Dof domain, zinc finger) B4FDH4 |
| Binding Motifs: | UP00339A_1 wrsrhtAtAGAACAythhwwm UP00589E_1 hrytmwctytwmgtaawawtdtr MA1823.2 AAAGAAAA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). [Pubmed] |
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