DNA Binding Site
| Accessions: | 3r8f_E (3D-footprint 20231221), MA1823.1.19 (JASPAR 2024) |
| Organisms: | Aquifex aeolicus, strain VF5, Zea mays |
| Libraries: | 3D-footprint 20231221 1, JASPAR 2024 2 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 12 |
| Sequence: | AAAAAAAAAAAA |
| Type: | Heterodimer |
| Binding TFs: | 3r8f_D (ATPase family associated with various cellular activities (AAA), Bacterial dnaA protein, IstB-like ATP binding protein, Bacterial dnaA protein helix-turn-helix) B4FDH4 (Dof domain, zinc finger) B4FDH4 |
| Binding Motifs: | 3r8f_ABCD AnnAnnanna MA1823.1 arAAAGAAAAar |
| Publications: | Duderstadt K.E, Chuang K, Berger J.M. DNA stretching by bacterial initiators promotes replication origin opening. Nature 478:209-13 (2011). [Pubmed] Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.