DNA Binding Motif
| Accessions: | 6erq_ACF (3D-footprint 20231221) |
| Names: | Transcription factor A, mitochondrial |
| Organisms: | Homo sapiens |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of the human mitochondrial transcription initiation complex at the HSP promoter |
| Length: | 34 |
| Consensus: | GGTnTnnnnnnnnnnGGGTAnnnnnnnAGCAGCG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 96 0 G 02 0 0 96 0 G 03 0 0 0 96 T 04 24 24 24 24 n 05 7 9 7 73 T 06 24 24 24 24 n 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 24 24 24 24 n 13 24 24 24 24 n 14 24 24 24 24 n 15 24 24 24 24 n 16 7 7 73 9 G 17 0 0 96 0 G 18 0 0 96 0 G 19 0 0 0 96 T 20 96 0 0 0 A 21 24 24 24 24 n 22 24 24 24 24 n 23 24 24 24 24 n 24 24 24 24 24 n 25 24 24 24 24 n 26 24 24 24 24 n 27 24 24 24 24 n 28 96 0 0 0 A 29 0 0 96 0 G 30 0 96 0 0 C 31 96 0 0 0 A 32 0 0 96 0 G 33 7 75 7 7 C 34 7 9 73 7 G |
| Binding TFs: | 6erq_C (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | 6erq_D 6erq_E |
| Publications: | Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P. Structural Basis of Mitochondrial Transcription Initiation. Cell 171:1072-1081 (2017). [Pubmed] |
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