DNA Binding Motif

						

			
Accessions: UN0442.1 (JASPAR 2024)

			
Names: Atf4-5
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 22
Consensus: rwwrwggaTGACGTCAkccwyy
Weblogo: 
PSSM: P0      A      C      G      T
01    254    239    267    240      r
02    281    220    244    255      w
03    302    203    239    255      w
04    271    227    254    247      r
05    275    222    248    256      w
06    225    143    419    213      g
07    173    180    438    209      g
08    588    220    170     22      a
09     10     18      7    965      T
10     19     37    817    127      G
11    924     11     34     30      A
12      9    832     11    149      C
13    157     12    821     10      G
14     26     43     13    917      T
15    150    763     62     25      C
16    847     35     63     55      A
17     50    215    298    437      k
18    219    437    171    173      c
19    204    416    150    230      c
20    262    244    221    273      w
21    245    257    226    273      y
22    249    254    207    290      y
Type: Heterodimer
Binding TFs: Q4H3V9 (bZIP transcription factor, Basic region leucine zipper)
Q4H3V9
			
	
			


			

				

				
				
				
				

			

			

		

	
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