DNA Binding Motif

						

			
Accessions: 1o3r_A (3D-footprint 20231221)

			
Names: CATABOLITE GENE ACTIVATOR PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES
Length: 8
Consensus: AAntGcGA
Weblogo: 
PSSM: P0      A      C      G      T
01     84      0      0     12      A
02     96      0      0      0      A
03     24     24     24     24      n
04     12     12     12     60      t
05      0      0     96      0      G
06     12     60     12     12      c
07      0      0     96      0      G
08     96      0      0      0      A
Binding TFs: 1o3r_A (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1o3r_B
1o3r_C
			
Publications: Chen S, Vojtechovsky J, Parkinson G.N, Ebright R.H, Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking. Journal of molecular biology 314:63-74 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.