DNA Binding Motif

						

			
Accessions: MA1862.1 (JASPAR 2024)

			
Names: FoxD-b
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwdtkwwTGTTTatwtwdkt
Weblogo: 
PSSM: P0      A      C      G      T
01    277    159    241    323      w
02    260    141    207    392      w
03    265    130    299    306      d
04    208    139    201    452      t
05    200    136    272    392      k
06    299     78    160    463      w
07    259     72    173    496      w
08     31     16     16    937      T
09     89     10    863     38      G
10     14     20     13    953      T
11     39      9     45    907      T
12     19      9     31    940      T
13    649     17    176    158      a
14    141    246    134    478      t
15    267    131    248    354      w
16    148    181    129    542      t
17    412     56    128    405      w
18    310    128    251    311      d
19    226    178    268    328      k
20    217    191    247    345      t
Type: Heterodimer
Binding TFs: Q4H3J2 (Fork head domain)
Q4H3J2
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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