DNA Binding Motif

						

			
Accessions: MA1637.2 (JASPAR 2024)

			
Names: EBF3
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 9
Consensus: CCCAAGGGA
Weblogo: 
PSSM: P0      A      C      G      T
01    219  21297    361    185      C
02    382  20681    261    738      C
03    336  21017    324    385      C
04  15089   3634   1436   1903      A
05  15926   1150   3374   1612      A
06    515    260  21188     99      G
07    881    230  20589    362      G
08    569    515  20515    463      G
09  16662   1819   1985   1596      A
Type: Heterodimer
Binding TFs: Q9H4W6 (IPT/TIG domain)
Q9H4W6
Binding Sites: MA1637.2.13 / MA1637.2.14 / MA1637.2.19
MA1637.2.12
MA1637.2.3
MA1637.2.10 / MA1637.2.16 / MA1637.2.2 / MA1637.2.5 / MA1637.2.6
MA1637.2.1 / MA1637.2.4
MA1637.2.11
MA1637.2.15
MA1637.2.17
MA1637.2.18
MA1637.2.20
MA1637.2.7
MA1637.2.8
MA1637.2.9
			
Publications: Siponen MI, Wisniewska M, Lehtiö L, Johansson I, Svensson L, Raszewski G, Nilsson L, Sigvardsson M, Berglund H. Structural determination of functional domains in early B-cell factor (EBF) family of transcription factors reveals similarities to Rel DNA-binding proteins and a novel dimerization motif. J Biol Chem 285:25875-9 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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