DNA Binding Motif

						

			
Accessions: 1mjq_GHIJ (3D-footprint 20231221)

			
Names: METHIONINE REPRESSOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE
Length: 16
Consensus: AGnTATCYwGAtAwCT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0      0     96      0      G
03     24     24     24     24      n
04      0      5      1     90      T
05     69      3      5     19      A
06      0      0      0     96      T
07      0     96      0      0      C
08      0     28      1     67      Y
09     56      3      1     36      w
10      0      0     96      0      G
11     96      0      0      0      A
12     17      1     13     65      t
13     92      0      3      1      A
14     56      5      5     30      w
15      0     96      0      0      C
16      3      5      3     85      T
Binding TFs: 1mjq_G / 1mjq_H / 1mjq_I / 1mjq_J (Met Apo-repressor, MetJ)
Binding Sites: 1mjq_K / 1mjq_L
			
Publications: Garvie C.W, Phillips S.E. Direct and indirect readout in mutant Met repressor-operator complexes. Structure (London, England : 1993) 8:905-14 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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