DNA Binding Motif

Accessions: UP00351A_1 (UniPROBE 20160601)
Names: Phd1, Putative transcription factor PHD1, YKL043W, YKL256
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: rrkkavCaTGCATmamgrwrg
Weblogo:
PSSM: P0 A C G T
01 0.40 0.10 0.42 0.08 r
02 0.31 0.15 0.39 0.15 r
03 0.17 0.15 0.42 0.26 k
04 0.16 0.13 0.45 0.26 k
05 0.51 0.15 0.17 0.18 a
06 0.30 0.26 0.33 0.12 v
07 0.04 0.69 0.19 0.08 C
08 0.61 0.22 0.10 0.08 a
09 0 0.04 0 0.96 T
10 0.01 0.01 0.98 0 G
11 0.01 0.97 0 0.02 C
12 0.97 0 0.02 0.01 A
13 0.01 0.03 0.20 0.76 T
14 0.30 0.52 0.12 0.06 m
15 0.62 0.08 0.10 0.19 a
16 0.32 0.32 0.21 0.15 m
17 0.24 0.24 0.41 0.11 g
18 0.29 0.23 0.40 0.09 r
19 0.33 0.22 0.12 0.33 w
20 0.27 0.21 0.30 0.22 r
21 0.13 0.15 0.61 0.12 g
Binding TFs: UP00351A (KilA-N domain)
Binding Sites: ACCTGCAT
AGATGCAT
ATGCAGCA
ATGCATAA
ATGCATGC
CATGCAGG
CATGCATA
CATGCATC
CATGCATG
CCTGCAGC
CCTGCAGG
CCTGCATC
CGCTGCAG
CTGATGCA
CTGCATCA
GATGCATC
GTGCTGCA
TGCATGCA
ATGCATAC
GCTGCAGC
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.