DNA Binding Motif
| Accessions: | UP00351A_1 (UniPROBE 20160601) |
| Names: | Phd1, Putative transcription factor PHD1, YKL043W, YKL256 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | rrkkavCaTGCATmamgrwrg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.40 0.10 0.42 0.08 r 02 0.31 0.15 0.39 0.15 r 03 0.17 0.15 0.42 0.26 k 04 0.16 0.13 0.45 0.26 k 05 0.51 0.15 0.17 0.18 a 06 0.30 0.26 0.33 0.12 v 07 0.04 0.69 0.19 0.08 C 08 0.61 0.22 0.10 0.08 a 09 0 0.04 0 0.96 T 10 0.01 0.01 0.98 0 G 11 0.01 0.97 0 0.02 C 12 0.97 0 0.02 0.01 A 13 0.01 0.03 0.20 0.76 T 14 0.30 0.52 0.12 0.06 m 15 0.62 0.08 0.10 0.19 a 16 0.32 0.32 0.21 0.15 m 17 0.24 0.24 0.41 0.11 g 18 0.29 0.23 0.40 0.09 r 19 0.33 0.22 0.12 0.33 w 20 0.27 0.21 0.30 0.22 r 21 0.13 0.15 0.61 0.12 g |
| Binding TFs: | UP00351A (KilA-N domain) |
| Binding Sites: | ACCTGCAT AGATGCAT ATGCAGCA ATGCATAA ATGCATGC CATGCAGG CATGCATA CATGCATC CATGCATG CCTGCAGC CCTGCAGG CCTGCATC CGCTGCAG CTGATGCA CTGCATCA GATGCATC GTGCTGCA TGCATGCA ATGCATAC GCTGCAGC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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