DNA Binding Motif
| Accessions: | MA2444.1 (JASPAR 2024) |
| Names: | SPL4A |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | GCGGTAsTACCGc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 12270 9903 86737 2071 G 02 3058 94296 3162 10465 C 03 10013 4796 92601 3571 G 04 2392 3534 104032 1023 G 05 2616 3736 693 103936 T 06 104978 745 1473 3785 A 07 897 67339 42026 719 s 08 4797 2490 2725 100969 T 09 100848 2601 4588 2944 A 10 5242 98702 3675 3362 C 11 8400 88474 4393 9714 C 12 10955 2396 94141 3489 G 13 7153 74731 13025 16072 c |
| Binding Sites: | MA2444.1.3 MA2444.1.2 MA2444.1.4 MA2444.1.10 MA2444.1.13 / MA2444.1.14 / MA2444.1.15 / MA2444.1.16 / MA2444.1.19 MA2444.1.7 MA2444.1.6 MA2444.1.5 MA2444.1.1 MA2444.1.11 MA2444.1.12 MA2444.1.17 MA2444.1.18 MA2444.1.20 MA2444.1.8 MA2444.1.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.