DNA Binding Motif

						

			
Accessions: UN0260.1 (JASPAR 2024)

			
Names: Prdm9
Organisms: Homo sapiens, Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 16
Consensus: rwGGcAGTAGCAcCwk
Weblogo: 
PSSM: P0      A      C      G      T
01   4121   1222   2741   1853      r
02   3050   1607   1782   3498      w
03   1806    241   6857   1033      G
04   2208    310   6962    457      G
05    778   6722    204   2233      c
06   8916     44    799    178      A
07    369    115   9283    170      G
08    295   2443    133   7066      T
09   9254     70    498    115      A
10   1178    536   7262    961      G
11     79   9649     56    153      C
12   8537    278    202    920      A
13    570   5520   1798   2049      c
14    296   9295    123    223      C
15   3954   1608    719   3656      w
16   1854   2213   2855   3015      k
Type: Heterodimer
Binding TFs: Q9NQV7 (Zinc finger, C2H2 type, KRAB box, SSXRD motif, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q9NQV7
Binding Sites: UN0260.1.1
UN0260.1.10
UN0260.1.11
UN0260.1.12
UN0260.1.13
UN0260.1.14
UN0260.1.15
UN0260.1.16
UN0260.1.17
UN0260.1.18
UN0260.1.19
UN0260.1.2
UN0260.1.20
UN0260.1.3
UN0260.1.4
UN0260.1.5
UN0260.1.6
UN0260.1.7
UN0260.1.8
UN0260.1.9
			
	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.