DNA Binding Motif

						

			
Accessions: UN0480.2 (JASPAR 2024)

			
Names: ZF-C2H2-6
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 10
Consensus: TtAATTGAAC
Weblogo: 
PSSM: P0      A      C      G      T
01     80    131     49    740      T
02    118    164    191    527      t
03    721     33    197     49      A
04    761     28    178     33      A
05     25     25     53    897      T
06     11     18     83    888      T
07     99     38    819     44      G
08    943     16     23     19      A
09    853     21     75     52      A
10     45    838     22     95      C
Type: Heterodimer
Binding TFs: Q4H2H1 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q4H2H1
			
	
			


			

				

				
				
				
				

			

			

		

	
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