DNA Binding Motif

						

			
Accessions: MA1606.1 (JASPAR 2024)

			
Names: Foxf1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: awrTAAACAaa
Weblogo: 
PSSM: P0      A      C      G      T
01  23159  10753  12462  13166      a
02  17275   7560   8287  26418      w
03  18534   3754  33599   3653      r
04    568    446   1158  57368      T
05  57293    899    445    903      A
06  53942   2249    811   2538      A
07  57167    475   1067    831      A
08    437  54394    522   4187      C
09  56436    745    443   1916      A
10  18673  12643  14294  13930      a
11  20323  11715  12844  14658      a
Type: Heterodimer
Binding TFs: Q61080 (Fork head domain)
Q61080
Binding Sites: MA1606.1.1
MA1606.1.10
MA1606.1.11
MA1606.1.12
MA1606.1.13
MA1606.1.14
MA1606.1.14 / MA1606.1.15
MA1606.1.15 / MA1606.1.16
MA1606.1.17
MA1606.1.16 / MA1606.1.18
MA1606.1.17 / MA1606.1.19
MA1606.1.1 / MA1606.1.2
MA1606.1.18 / MA1606.1.20
MA1606.1.2 / MA1606.1.3
MA1606.1.3 / MA1606.1.4
MA1606.1.4 / MA1606.1.5
MA1606.1.5 / MA1606.1.6
MA1606.1.7
MA1606.1.8
MA1606.1.9
MA1606.1.12
MA1606.1.19
MA1606.1.20
MA1606.1.6
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.