DNA Binding Motif

						

			
Accessions: MA1160.2 (JASPAR 2024)

			
Names: IDD6
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 16
Consensus: tTTTTGTCgTTTWsYk
Weblogo: 
PSSM: P0      A      C      G      T
01     58     23     28    133      t
02     25     15     11    191      T
03      0      6      5    231      T
04      0      2      0    240      T
05      0      6      1    235      T
06      0      1    240      1      G
07      0      2     15    225      T
08      2    237      0      3      C
09     13     21    154     54      g
10      2      9     14    217      T
11      7     32     13    190      T
12     35      0      6    201      T
13     65      5      1    171      W
14     21     89    108     24      s
15      4     66      4    168      Y
16     38     15    117     72      k
Type: Heterodimer
Binding TFs: Q8RWX7
Q8RWX7
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.