DNA Binding Motif

						

			
Accessions: 4ldx_AB (3D-footprint 20231221)

			
Names: Auxin response factor 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7
Length: 20
Consensus: TTGTntCCCnnnGGGAnACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0      0     96      T
03      0      0     96      0      G
04      3     16      1     76      T
05     24     24     24     24      n
06     17     11     11     57      t
07     13     69      3     11      C
08      0     96      0      0      C
09      1     84      8      3      C
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      1      1     93      1      G
14      0      0     96      0      G
15      6      3     84      3      G
16     72     16      3      5      A
17     24     24     24     24      n
18     94      1      0      1      A
19      0     94      2      0      C
20     96      0      0      0      A
Type: Heterodimer
Binding TFs: 4ldx_A (B3 DNA binding domain, Auxin response factor)
4ldx_B (B3 DNA binding domain, Auxin response factor)
Binding Sites: 4ldx_C
4ldx_D
			
Publications: Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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