DNA Binding Motif

						

			
Accessions: MA1897.1 (JASPAR 2024)

			
Names: Max
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: kgktdrmCACGTGkyhamcm
Weblogo: 
PSSM: P0      A      C      G      T
01    102    212    266    421      k
02    123    169    464    244      g
03    193    244    300    263      k
04    228    246    249    277      t
05    259    218    265    258      d
06    314    220    258    209      r
07    265    330    245    160      m
08     53    932      9      7      C
09    885      5     80     29      A
10      3    880     11    105      C
11    105     11    880      3      G
12     29     80      5    885      T
13      7      9    932     53      G
14    160    245    330    265      k
15    209    258    220    314      y
16    258    265    218    259      h
17    277    249    246    228      a
18    263    300    244    193      m
19    244    464    169    123      c
20    421    266    212    102      m
Type: Heterodimer
Binding TFs: Q4H376 (Helix-loop-helix DNA-binding domain)
Q4H376
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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