DNA Binding Motif

						

			
Accessions: 5zjq_AB (3D-footprint 20231221)

			
Names: Homeobox protein abdominal-B
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of AbdB/Exd complex bound to a 'Red14' DNA sequence
Length: 11
Consensus: ATGATTTATGA
Weblogo: 
PSSM: P0      A      C      G      T
01     87      0      9      0      A
02      0      0      0     96      T
03      0      0     96      0      G
04     96      0      0      0      A
05      0      0      0     96      T
06      9      0      1     86      T
07      0      9      1     86      T
08     96      0      0      0      A
09      0      0      0     96      T
10      9      9     67     11      G
11     67     11      9      9      A
Type: Heterodimer
Binding TFs: 5zjq_A (Homeobox domain)
5zjq_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 5zjq_C
5zjq_D
			
Publications: Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS. Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep 24:2221-2230 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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